PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0539s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 328aa    MW: 35720.2 Da    PI: 6.5661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0539s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-173280355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  Kalax.0539s0005.1.p 32 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMKG 80
                         56******.**********965...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.1E-333194IPR001471AP2/ERF domain
CDDcd000184.13E-293187No hitNo description
PROSITE profilePS5103220.4813188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-283288IPR001471AP2/ERF domain
PRINTSPR003672.1E-73243IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-203290IPR016177DNA-binding domain
PfamPF008478.7E-113480IPR001471AP2/ERF domain
PRINTSPR003672.1E-75470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAQTFAILQR NTSPVQSSER RGKRKQAEPG RFLGVRRRPW GRYAAEIRDP TTKERHWLGT  60
FDTAHEAALA YDRAALSMKG TQARTNFLYS NNTTFHSLLT TPFDALIPSS QFLITTTHSM  120
KPQQQPSISQ NILIPCQTNQ WQQSHDHSLH GAAATAQPES DMCSGETSES QQMSESYDNA  180
AGAGFFFSSS ETNSGYLDSI VPDSLLKPPS SPGSTNSKYT HLNSSSYDRN SGATHHQMHS  240
HYCDNILFQM DSVPGGGYGY QDTTCNCNGF DKSELSAMVN NPLMVEDGCM GALYPMIGNP  300
AGSSSSSSYQ ANPSGSHFGD VGSYSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-193287359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276452.12e-86PREDICTED: ethylene-responsive transcription factor ERF086
SwissprotQ6J9Q23e-53ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA5B1K74e-87A5B1K7_VITVI; Putative uncharacterized protein
STRINGPOPTR_0008s22750.13e-76(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-54ERF family protein